[GHC] #8371: ghci byte compiler + FFI crashes when used with embedded R
Dominick Samperi
djsamperi at gmail.com
Sat Sep 28 14:08:07 UTC 2013
Thanks! Turning off R's stack limit checks will not work. I tried this
and this leads to a segfault. Fortunately, your experiments led me
to a work-around: simply use the -fno-ghci-sandbox flag.
R is not thread-safe, and this flag tells ghci to run computations
in the main thread instead of forking.
On Sat, Sep 28, 2013 at 1:29 AM, GHC <ghc-devs at haskell.org> wrote:
> #8371: ghci byte compiler + FFI crashes when used with embedded R
> -------------------------------+----------------------------------
> Reporter: dsamperi | Owner:
> Type: bug | Status: new
> Priority: normal | Milestone:
> Component: GHCi | Version: 7.6.3
> Resolution: | Keywords:
> Operating System: Linux | Architecture: x86_64 (amd64)
> Type of failure: GHCi crash | Difficulty: Unknown
> Test Case: | Blocked By:
> Blocking: | Related Tickets:
> -------------------------------+----------------------------------
>
> Comment (by rwbarton):
>
> I can reproduce this without ghci, by putting a forkIO around the body of
> main (and adding a threadDelay in the main thread).
>
> It seems to just be an interaction between R's method for determining the
> base address of the stack and the way pthread allocates stacks for new
> threads. Try this C example program `pt.c`.
>
> {{{
> #include <stdio.h>
> #include <unistd.h>
> #include <pthread.h>
>
> int Rf_initEmbeddedR(int argc, char **argv);
>
> void *foo(void *blah)
> {
> char *args[] = {"pt", "--gui=none", "--silent", "--vanilla"};
> int r;
> setenv("R_HOME", "/usr/lib/R", 1);
> r = Rf_initEmbeddedR(sizeof(args)/sizeof(args[0]), args);
> printf("r = %d\n", r);
> }
>
> int main(void)
> {
> pthread_t tid;
> pthread_create(&tid, NULL, foo, NULL);
> while (1)
> sleep(1);
> return 0;
> }
> }}}
>
> {{{
> rwbarton at adjunction:/tmp$ gcc -o pt pt.c -lpthread -lR
> rwbarton at adjunction:/tmp$ ./pt
> Error: C stack usage is too close to the limit
> Error: C stack usage is too close to the limit
> r = 1
> }}}
>
> It would probably be best to just disable R's stack limit checks, if
> possible.
>
> --
> Ticket URL: <http://ghc.haskell.org/trac/ghc/ticket/8371#comment:6>
> GHC <http://www.haskell.org/ghc/>
> The Glasgow Haskell Compiler
>
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